Package: rrBLUP 4.6.3
rrBLUP: Ridge Regression and Other Kernels for Genomic Selection
Software for genomic prediction with the RR-BLUP mixed model (Endelman 2011, <doi:10.3835/plantgenome2011.08.0024>). One application is to estimate marker effects by ridge regression; alternatively, BLUPs can be calculated based on an additive relationship matrix or a Gaussian kernel.
Authors:
rrBLUP_4.6.3.tar.gz
rrBLUP_4.6.3.zip(r-4.7)rrBLUP_4.6.3.zip(r-4.6)rrBLUP_4.6.3.zip(r-4.5)
rrBLUP_4.6.3.tgz(r-4.6-any)rrBLUP_4.6.3.tgz(r-4.5-any)
rrBLUP_4.6.3.tar.gz(r-4.7-any)rrBLUP_4.6.3.tar.gz(r-4.6-any)
rrBLUP_4.6.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
rrBLUP/json (API)
NEWS
| # Install 'rrBLUP' in R: |
| install.packages('rrBLUP', repos = c('https://jendelman.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:35709746f5. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 107 | ||
| source / vignettes | OK | 144 | ||
| linux-release-x86_64 | OK | 91 | ||
| macos-release-arm64 | OK | 90 | ||
| macos-oldrel-arm64 | OK | 88 | ||
| windows-devel | OK | 63 | ||
| windows-release | OK | 71 | ||
| windows-oldrel | OK | 69 | ||
| wasm-release | OK | 84 |
Exports:A.matGWASkin.blupkinship.BLUPmixed.solve
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Ridge regression and other kernels for genomic selection | rrBLUP-package |
| Additive relationship matrix | A.mat |
| Genome-wide association analysis | GWAS |
| Genotypic value prediction based on kinship | kin.blup |
| Genomic prediction by kinship-BLUP (deprecated) | kinship.BLUP |
| Mixed-model solver | mixed.solve |
