Package: rrBLUP 4.6.3
rrBLUP: Ridge Regression and Other Kernels for Genomic Selection
Software for genomic prediction with the RR-BLUP mixed model (Endelman 2011, <doi:10.3835/plantgenome2011.08.0024>). One application is to estimate marker effects by ridge regression; alternatively, BLUPs can be calculated based on an additive relationship matrix or a Gaussian kernel.
Authors:
rrBLUP_4.6.3.tar.gz
rrBLUP_4.6.3.zip(r-4.5)rrBLUP_4.6.3.zip(r-4.4)rrBLUP_4.6.3.zip(r-4.3)
rrBLUP_4.6.3.tgz(r-4.4-any)rrBLUP_4.6.3.tgz(r-4.3-any)
rrBLUP_4.6.3.tar.gz(r-4.5-noble)rrBLUP_4.6.3.tar.gz(r-4.4-noble)
rrBLUP_4.6.3.tgz(r-4.4-emscripten)rrBLUP_4.6.3.tgz(r-4.3-emscripten)
rrBLUP.pdf |rrBLUP.html✨
rrBLUP/json (API)
NEWS
| # Install 'rrBLUP' in R: |
| install.packages('rrBLUP', repos = c('https://jendelman.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 10 months agofrom:35709746f5. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 20 2024 |
| R-4.5-win | OK | Sep 20 2024 |
| R-4.5-linux | OK | Sep 20 2024 |
| R-4.4-win | OK | Sep 20 2024 |
| R-4.4-mac | OK | Sep 20 2024 |
| R-4.3-win | OK | Sep 20 2024 |
| R-4.3-mac | OK | Sep 20 2024 |
Exports:A.matGWASkin.blupkinship.BLUPmixed.solve
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Ridge regression and other kernels for genomic selection | rrBLUP-package |
| Additive relationship matrix | A.mat |
| Genome-wide association analysis | GWAS |
| Genotypic value prediction based on kinship | kin.blup |
| Genomic prediction by kinship-BLUP (deprecated) | kinship.BLUP |
| Mixed-model solver | mixed.solve |
