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rrBLUP - Ridge Regression and Other Kernels for Genomic Selection

Software for genomic prediction with the RR-BLUP mixed model (Endelman 2011, <doi:10.3835/plantgenome2011.08.0024>). One application is to estimate marker effects by ridge regression; alternatively, BLUPs can be calculated based on an additive relationship matrix or a Gaussian kernel.

Last updated 12 months ago

6.50 score 13 stars 7 packages 558 scripts 2.1k downloads

LPmerge - Merging Linkage Maps by Linear Programming

Creates a consensus genetic map by merging linkage maps from different populations. The software uses linear programming (LP) to efficiently minimize the mean absolute error between the consensus map and the linkage maps. This minimization is performed subject to linear inequality constraints that ensure the ordering of the markers in the linkage maps is preserved. When marker order is inconsistent between linkage maps, a minimum set of ordinal constraints is deleted to resolve the conflicts.

Last updated 6 years ago

2.00 score 4 scripts 171 downloads