Package: LPmerge 1.7

LPmerge: Merging Linkage Maps by Linear Programming

Creates a consensus genetic map by merging linkage maps from different populations. The software uses linear programming (LP) to efficiently minimize the mean absolute error between the consensus map and the linkage maps. This minimization is performed subject to linear inequality constraints that ensure the ordering of the markers in the linkage maps is preserved. When marker order is inconsistent between linkage maps, a minimum set of ordinal constraints is deleted to resolve the conflicts.

Authors:Jeffrey Endelman

LPmerge_1.7.tar.gz
LPmerge_1.7.zip(r-4.5)LPmerge_1.7.zip(r-4.4)LPmerge_1.7.zip(r-4.3)
LPmerge_1.7.tgz(r-4.5-any)LPmerge_1.7.tgz(r-4.4-any)LPmerge_1.7.tgz(r-4.3-any)
LPmerge_1.7.tar.gz(r-4.5-noble)LPmerge_1.7.tar.gz(r-4.4-noble)
LPmerge_1.7.tgz(r-4.4-emscripten)LPmerge_1.7.tgz(r-4.3-emscripten)
LPmerge.pdf |LPmerge.html
LPmerge/json (API)

# Install 'LPmerge' in R:
install.packages('LPmerge', repos = c('https://jendelman.r-universe.dev', 'https://cloud.r-project.org'))

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.00 score 5 scripts 213 downloads 24 mentions 1 exports 4 dependencies

Last updated 7 years agofrom:038b338586. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 23 2025
R-4.5-winOKMar 23 2025
R-4.5-macOKMar 23 2025
R-4.5-linuxOKMar 23 2025
R-4.4-winOKMar 23 2025
R-4.4-macOKMar 23 2025
R-4.4-linuxOKMar 23 2025
R-4.3-winOKMar 23 2025
R-4.3-macOKMar 23 2025

Exports:LPmerge

Dependencies:latticeMatrixRglpkslam